Education
Monte Carlo
Imaging Archives
Open-Access Medical Image Repositories
Radiation Dosimetry Tools: NCIDose
RadImageNet: An Open Radiologic Deep Learning Research Dataset for Effective Transfer Learning
Visualization
3D slicer image computing platform
Nvidia AI-assisted annotation (AIAA) for 3D Slicer
Slicer CAT: Creating custom applications based on 3D Slicer
Total Segmentator AI model is now available as an extension for 3D Slicer
NVIDIA Clara Imaging (using GPU)
Medical Segmentation Decathlon
ITK-SNAP - a software application used to segment structures in 3D medical images.
The Medical Imaging Interaction Toolkit (MITK)
Advanced Normalization Tools (ANTs)
Fiji (ImageJ + many useful plugins)
XNAT – a DICOM database system with many image handling tools
Project InnerEye – Democratizing Medical Imaging AI
CERR – a viewer and radiotherapy data manipulation system in Matlab
and the associated open-source tools
Image Viewing and Processing (FREE MEDICAL IMAGING SOFTWARE)
Python Imaging Library (Pillow) (Link)
PlatiPy documentation (Processing Library and Analysis Toolkit for Medical Imaging in Python)
Legacy Bioimage Suite; BioImage Suite Web; BioImage Suite Manual; BioImage Suite
Treatment Planning
Machine Learning
A platform for end-to-end development of machine learning solutions in biomedical imaging.
AI in Medical Physics: Guidelines for publication (Link)
AI tools for analysis of PET/CT and CT studies (Link)
Medical Open Network for Artificial Intelligence (MONAI) (Link)
MONAI – An Open Source Framework for AI Development in Medical Imaging (YoUTube Link)
NiftyNet (Link)